3D Slicer GUI#
3D Slicer is an open-source software platform for medical image informatics, image processing, and three-dimensional visualization.
TorchIO provides a 3D Slicer extension for quick experimentation and visualization of the package features without any coding.
The TorchIO extension can be easily installed using the Extensions Manager.
The code and installation instructions are available on GitHub.
The Preview version (built nightly) is recommended. You can download and install Slicer from their download website or, if you are on macOS, using Homebrew:
brew tap homebrew/cask-versions && brew cask install slicer-preview
This module can be used to quickly visualize the effect of each transform parameter. That way, users can have an intuitive feeling of what the output of a transform looks like without any coding at all.
Go to the
Sample Data module to get an image we can use:
Click on an image to download, for example MRHead ,
and go to the
TorchIO Transforms module:
Select the input and output volume nodes:
Modify the transform parameters and click on
Hovering the mouse over the transforms will show tooltips extracted from the
You can click on the
Toggle volumes button to switch between input and