:orphan:

Examples gallery
================

Below is a gallery of examples covering several features of TorchIO.



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    <div class="sphx-glr-thumbcontainer" tooltip="Use torchio.Subject.plot to plot the images within a subject.">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_colin27_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_colin27.py`

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      <div class="sphx-glr-thumbnail-title">Plot a subject</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="In this example we show how the kwargs include and exclude can be used to apply a transform to ...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_include_exclude_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_include_exclude.py`

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      <div class="sphx-glr-thumbnail-title">Exclude images from transform</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="In this example, we create a custom preprocessing transfom that changes the image spacing acros...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_custom_z_spacing_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_custom_z_spacing.py`

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      <div class="sphx-glr-thumbnail-title">Resample only one axis</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="In this example, volumes are padded, scaled, rotated and sometimes flipped. Then, 2D slices are...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_3d_to_2d_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_3d_to_2d.py`

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      <div class="sphx-glr-thumbnail-title">Sample slices from volumes</div>
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    <div class="sphx-glr-thumbcontainer" tooltip="Sometimes we would like to see which transform was applied to a certain batch during training. ...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_history_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_history.py`

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      <div class="sphx-glr-thumbnail-title">Trace applied transforms</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="In this example, we use torchio.Resample((2, 2, 1)) to divide the spatial size of the clip (hei...">

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  .. image:: /auto_examples/images/thumb/sphx_glr_plot_video_thumb.png
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  :ref:`sphx_glr_auto_examples_plot_video.py`

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      <div class="sphx-glr-thumbnail-title">Transform video</div>
    </div>


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    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_colin27
   /auto_examples/plot_include_exclude
   /auto_examples/plot_custom_z_spacing
   /auto_examples/plot_3d_to_2d
   /auto_examples/plot_history
   /auto_examples/plot_video


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  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


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 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_